rs234081415 SNP Detail

Summary

• ID
  rs234081415
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59784663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaacaaaCA AAAGAGTGAA CGCCACACCA
  AGATGCTACT GGAAGTTACC CTATGCTGCA TAGCCTCACG CTAAATCCAG ACGTTTACCT
  TAAGACGTAA AAGCGTTTGC CAGGCGGTGG TGGCGTGGGG GGGGGGGGGg gggggcagag
  S
  caggcatagc tctatgaatt caaggccaac cttcaaagcg agttccagga cagccagggc
  tacccagaga aaccctattt gcaaacaaac aaaCAAATAA ACAGAAATGC AAAAGACATA
  AATATGTTTT AAGGTGTATT TGTTCTGTGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141382	CHEV_4_59797535	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234081415					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59784663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	555 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	322 bp upstream
Rr398295	regulatory region 398295	580 bp downstream
Rr593135	regulatory region 593135	866 bp distal
Rr593136	regulatory region 593136	307 bp distal
Rr593137	regulatory region 593137	627 bp distal
Rr593138	regulatory region 593138	1800 bp proximal
Tssr41950	transcription start site region 41950	787 bp upstream