rs234076437 SNP Detail

Summary

• ID
  rs234076437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148021589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGGCGA GGCCTTGATG
  TCTAGAAGAG GAGACTTAAT ATCATCTGCA CCGCGATGGT GGGAATATAT ATATAAAGTC
  TAGCCCCAGC TCCCAAAAGA GAATCACTTA ATTCAACTTT CCGCTCCCTG GAAGGAAATC
  AGAAAGTAGT CAAGGAAATT GCAGCGGTTA ATTATGGGAT GGATGTGTGT GTGTGTGGTG
  R
  TGGTGGGGGG GGGGTATTAG ATGGATGGAT AAGTGGGTGT GTAAGTGGGT GAGTGAGTGG
  ATGGTTGGAT GGCGGTATAG GTGGATGGAT GGGTAAGTGG CTGGCTGGCT GGATAGATGG
  ATGATGGGGG GCCAGATGGA TGGATGGGTG AGTGAGTGGA TGGATGAATG AGGGCTAAGT
  GGATGGAGTG AAAATTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321415848	CHEV_4_147311241	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234076437					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148021589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15284	CpG island 15284	163 bp distal
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	365 bp upstream
Rr377387	regulatory region 377387	145 bp upstream
Rr604526	regulatory region 604526	within coordinates
Rr604527	regulatory region 604527	270 bp proximal
Rr604528	regulatory region 604528	925 bp proximal
Tssr40234	transcription start site region 40234	280 bp downstream
Tssr44566	transcription start site region 44566	399 bp upstream
Tssr44567	transcription start site region 44567	364 bp upstream