rs234076342 SNP Detail

Summary

• ID
  rs234076342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163322690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACTGC CTGGAGCGTG
  GCGCCTGAGT AAAGCTGGTG GTGCCCGCTA GAGGGCAGAT CTCTGGCCTT CCTAGCTAGA
  AAGCTGCGCA TTCTGTCTGT GCCTCCAACA CACACAAACT TAGGGATCGG GACCACAGGG
  CAGGCGCTAA GTGTAGGACC CATCTTTGCC CATCAGCAGG ATGCAGGGAG AAGAGGAAGG
  R
  TATTGTGCAG GATCCTCACT ACCCCCAAGC GGCTGGCTTT GTGGACTACC TCCCAACCCC
  AACCTCCTAG GGAGATGCCC CCTGCAGACC TTAGACAGTC ATTCAGGCAG CCAAGGGCCC
  CGGCCTAGGA GGAGGAGCTA GCCTGGCCTG GAAGAGGTTG GTAAAGATGA GAAAGAGGTC
  AGCTTCATGC CAGGATGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603407	CHEV_2_163306506	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234076342					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163322690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	853 bp proximal
Rr569389	regulatory region 569389	within coordinates
Rr569390	regulatory region 569390	139 bp distal
Rr569391	regulatory region 569391	72 bp proximal
Rr569392	regulatory region 569392	740 bp proximal
Rr569393	regulatory region 569393	924 bp proximal