rs234054085 SNP Detail

Summary

• ID
  rs234054085
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121361312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACATATC TGCAAAGAAG
  AGAGTCACCA GAGGAAAAAA AACCCTTAAG TGTCCAGGGA TGGTCACATG GCCAACAAAA
  CCCAGATCCA ACACAGCAGG TGGTGAGCAA GCACAACAGG AAGGGAGGAG GCCAAGCACC
  TCTGGGGGTC TCCTCATAGC TCCTCAGGAC TCCTCATAGC TCCTCAGGAC TCCTCATAGC
  T
  CCTCAGGACT CCTCATGTCT CCTAACAGCT CCTCATGTCT CTTCACAGCT CCTCATGTCT
  CCTCACAGCT CCTCACAGCT CCTCATAGCT CCTCAGGACT CCTCCCGTCT CCTCACAGCT
  CCTCCCGAGT AACCCTCTCA GTCTCAAATG ACCTCACCTG TACAGAGGAA AAGTTAATTT
  CTATCCTAGT CTTGAGCCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MA/MyJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss359478274	MGP_WTSI_3_121270581	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MA/MyJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs234054085					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359478274	MGP_WTSI_3_121270581	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121361312 () rs orientation: forward

Symbol	Name	Function Class
Gm33547	predicted gene, 33547	within coordinates
Rr584118	regulatory region 584118	within coordinates