rs234030135 SNP Detail

Summary

• ID
  rs234030135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38113271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCATCTC ACCCCGGAGT
  CTGCCCTGCG GGACAGGCGC AGGGTAAACG CGGGGCCGGA GGACCGAGGC CGCCCGTCGC
  CCCCTCCCGC CCCACCCCGC CCTGCAGGTC CCCGGGGGAG CGCGCGGCGG CTCACCAGCA
  GGAGCCGCGT GCAAGCCTGG CCGCCGCGTT CGCGCGCGCG TGGAGCGACG GAGCCGAGCG
  R
  CCGTCGGTCC TTTATAGCTC CGGGGGGAGG GGGTCGCGCT TTCGTAACCG CGCGGGGTGA
  AAGACCGCGG GGAGGTGCCG GGGGCGGGAG GGGGGGGGGC GGCCGAGCTT GCATAACGCT
  CCCTGACTCA CTCCTGAACG CACGCGGGGC CCCTCCGTCA GCCTTGCCGT CCCACGTCGC
  CTATGCTCCG AGCTCCGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402412250	MGP_WTSI_19_38199313	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234030135					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402412250	MGP_WTSI_19_38199313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38113271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32440	predicted gene, 32440			725 bp downstream
Rbp4	retinol binding protein 4, plasma			Intron
				mRNA-UTR
Rr547240	regulatory region 547240			within coordinates
Tssr159118	transcription start site region 159118			764 bp upstream
Tssr159119	transcription start site region 159119			692 bp upstream
Tssr159120	transcription start site region 159120			469 bp upstream
Tssr159121	transcription start site region 159121			440 bp upstream
Tssr159122	transcription start site region 159122			388 bp upstream
Tssr159123	transcription start site region 159123			249 bp upstream
Tssr159124	transcription start site region 159124			146 bp upstream
Tssr159125	transcription start site region 159125			7 bp upstream
Tssr159126	transcription start site region 159126			411 bp downstream
Tssr159127	transcription start site region 159127			422 bp downstream
Tssr159128	transcription start site region 159128			435 bp downstream