rs234023282 SNP Detail

Summary

• ID
  rs234023282
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89294836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAGCCC CAGCTGTCCC
  CACCCCCGCT TGTCCTTACT CAGTCCTAAA AGGGGAAAAA GGTGAGGGGT AGGAAAGGTA
  GGAGCCGGCC CAGTCCAGGA GGACAGAGGT GAGGAGCAAT GGGAGAGGCT GTTGGAGGTG
  GGACCAGGAG AAGGAAGGGA GGGGAGGGGA CAGAAGACAG CCTTGGCCAA ATCGGGAGGA
  K
  GGGAACTCTG AACATTCAGT GCCAGGGGTG ACAGGTGCCT AGGTCCCAGC CCCTCAGGGT
  ATGTGGAACT AGGGGAACAT AAAGAGACCC TCCAGACCCT AGTAAGCTCT TGCCCGTTCT
  GGGAGCTGTC CGGATTCTCT TCACCTTGTA CCAGGCTGGG GCCCTCAGGG GCTGGGCAAG
  GCGGCACCCG CCCTCCTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811577	MGP_WTSI_3_89191451	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234023282					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811577	MGP_WTSI_3_89191451	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89294836 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580064	regulatory region 580064			1561 bp distal
Rr580065	regulatory region 580065			351 bp distal
Rr580066	regulatory region 580066			within coordinates
Rr580067	regulatory region 580067			368 bp proximal
Rr580068	regulatory region 580068			1633 bp proximal
Tssr30096	transcription start site region 30096			1800 bp upstream
Tssr34128	transcription start site region 34128			429 bp upstream
Tssr34129	transcription start site region 34129			381 bp upstream
Tssr34130	transcription start site region 34130			206 bp upstream
Tssr34131	transcription start site region 34131			175 bp upstream
Tssr34132	transcription start site region 34132			351 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B			Intron
				mRNA-UTR