rs233999345 SNP Detail

Summary

• ID
  rs233999345
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54478382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACGCACA GAAAAATCAC
  TGAAAAGTCT AAAAAGTCGA ACCCTCCATT AAATCCCAAC CAGGTTGGTA TTCTTTTAAG
  ACTAAGGTTT GGCGCTTGAT CAGCAGACTC TCAGAGAACT CTTCTGGGCC CTTTTGCGCG
  CAGCAGTATT GAATCATAGC CTCGGGCCTT CTCGCTCAGG TTGGGGGAGA TGTAAGCTTC
  W
  GCTTGTGCTG TGAGCAGCCT CAGCAAAACA GAGCTCGATG TCTTTAAGGG TTTTATTAAG
  AGACCTACAG CCTGGTTATC TACCGATTCT TAGACTTAAT ACACTGCAGA ATAATTCAAA
  CAACTTCAGA TGAGCCCCGA GGGATAGCAA CATGAAGGTC AGACTAAGTT TTATCCCAAC
  CAGGGTTTAC CTTCCCCAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771965	CHEV_3_54374883	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233999345					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54478382 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	within coordinates
Rr576809	regulatory region 576809	259 bp distal
Tssr29130	transcription start site region 29130	1044 bp downstream