rs233973337 SNP Detail

Summary

• ID
  rs233973337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116112968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGAAGGG GTGGATGGAC TGGGATCAGA
  TCTCTTTTTT TAATAAAGTG TTTTATTTTT ATTGAGTTTG TGCAAATATA TAAAATTGTA
  GAAATGCATA GAAGTTACTA CAGAGGACAA AACATGATGC AGGAGGTTTT GCGTATTTTC
  Y
  CTCAATTTTT GTTGTTGTTT AGAAGACTTT AAAAATGCCT ACATTACAAT GAGTACCTGA
  ACACAATCGG CCATTGCCAG TTAAGCACTG CAGGCTCCTG TTCTGTGGTA TGAGTCCTGC
  TGCCACCAAG TGGCAAAACA GAAAGCATAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321917235	CHEV_6_116086025	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233973337					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116112968 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	1413 bp upstream
Rr637158	regulatory region 637158	within coordinates
Rr637159	regulatory region 637159	117 bp proximal
Rr637160	regulatory region 637160	407 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	1410 bp upstream