rs233966213 SNP Detail

Summary

• ID
  rs233966213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134639443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTATGA GCGAGTTCAA
  AGCCAACATG ACCTACAGGA GATCCATCCA ACCATCCATC CATCCATCCA TCCAAAAAAA
  AAAAAACCAA AGAGCTTATG ATCTTCCTAA TGCTTCTCCC TACCAGATTA GGGAGAATAT
  GAACTCTCCT GTCCTGAAAA ATGGGAATAT CTATCTCGAC TGGTTTGGAC CTGATTGTCT
  Y
  GTTAATCCTT TCTTCCTTTT TTTTTTTTTT TTTTTTTTTG TTGTTTTTTT TTGTTGTTTT
  TCGAGACTGG GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGACCAAGC
  TGGCCTCGAA CTCAGAAATC TGCCTGTCTC TGCCTCCAGA GTGCTTGGGA TTAAAGGCGT
  GTTCTACCAC TGCCTGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321349926	CHEV_4_134468047	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233966213					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134639443 () rs orientation: forward

Symbol	Name	Function Class
Rr601858	regulatory region 601858	1017 bp proximal
Rr601859	regulatory region 601859	1515 bp proximal
Tmem50a	transmembrane protein 50A	Intron