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rs233963915 SNP Detail
Summary
  • ID
    rs233963915
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:117149919 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACCAT TGGACAATTT GTCTAGACTG
M
TCCTTGCCCA CCTGAACTGC CCTGT                                      

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641191306 FVB_NJ_6_117122976 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C C C C A C A C C C C C A C A C C C C A C A C A C C C C C A C A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233963915 SNP C C C C C C C C C C C C C C C C C C C A C C C C C A C A C C C C C A C A C C C C A C A C A C C C C C A C A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641191306 FVB_NJ_6_117122976 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117149919 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Intron
Rr637288 regulatory region 637288 290 bp distal
Rr637289 regulatory region 637289 908 bp proximal
Rr637290 regulatory region 637290 1093 bp proximal
Rr637291 regulatory region 637291 1144 bp proximal
Tssr58392 transcription start site region 58392 1471 bp downstream
Tssr58393 transcription start site region 58393 1452 bp downstream
Tssr58394 transcription start site region 58394 1412 bp downstream
Tssr58395 transcription start site region 58395 534 bp upstream
Tssr58396 transcription start site region 58396 550 bp upstream
Tssr58397 transcription start site region 58397 588 bp upstream
Tssr58398 transcription start site region 58398 614 bp upstream
Tssr58399 transcription start site region 58399 636 bp upstream
Tssr58400 transcription start site region 58400 664 bp upstream
Tssr58401 transcription start site region 58401 700 bp upstream
Tssr58402 transcription start site region 58402 731 bp upstream
Tssr58403 transcription start site region 58403 749 bp upstream
Tssr58404 transcription start site region 58404 768 bp upstream
Tssr58405 transcription start site region 58405 810 bp upstream
Tssr58406 transcription start site region 58406 840 bp upstream
Tssr58407 transcription start site region 58407 871 bp upstream
Tssr58408 transcription start site region 58408 938 bp upstream
Tssr58409 transcription start site region 58409 960 bp upstream
Tssr58410 transcription start site region 58410 982 bp upstream
Tssr58411 transcription start site region 58411 998 bp upstream
Tssr58412 transcription start site region 58412 1025 bp upstream
Tssr58413 transcription start site region 58413 1038 bp upstream
Tssr58414 transcription start site region 58414 1071 bp upstream
Tssr58415 transcription start site region 58415 1086 bp upstream
Tssr58416 transcription start site region 58416 1101 bp upstream
Tssr58417 transcription start site region 58417 1155 bp upstream
Tssr58418 transcription start site region 58418 1188 bp upstream
Tssr58419 transcription start site region 58419 1207 bp upstream
Tssr58420 transcription start site region 58420 1234 bp upstream
Tssr58421 transcription start site region 58421 1253 bp upstream
Tssr58422 transcription start site region 58422 1279 bp upstream
Tssr58423 transcription start site region 58423 1287 bp upstream
Tssr58424 transcription start site region 58424 1349 bp upstream
Tssr58425 transcription start site region 58425 1394 bp upstream
Tssr58426 transcription start site region 58426 1416 bp upstream
Tssr58427 transcription start site region 58427 1443 bp upstream
Tssr58428 transcription start site region 58428 1458 bp upstream
Tssr58429 transcription start site region 58429 1523 bp upstream
Tssr58430 transcription start site region 58430 1568 bp upstream
Tssr58431 transcription start site region 58431 1664 bp upstream
Tssr58432 transcription start site region 58432 1737 bp upstream
Tssr58433 transcription start site region 58433 1773 bp upstream
Tssr62617 transcription start site region 62617 598 bp downstream
Tssr62618 transcription start site region 62618 620 bp downstream
Tssr62619 transcription start site region 62619 656 bp downstream
Tssr62620 transcription start site region 62620 699 bp downstream
Tssr62621 transcription start site region 62621 765 bp downstream
Tssr62622 transcription start site region 62622 1317 bp downstream
Tssr62623 transcription start site region 62623 1335 bp downstream
Tssr62624 transcription start site region 62624 1450 bp downstream
Tssr62625 transcription start site region 62625 1601 bp downstream
Tssr62626 transcription start site region 62626 1697 bp downstream
Tssr62627 transcription start site region 62627 1728 bp downstream
Tssr62628 transcription start site region 62628 1863 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory