rs233957868 SNP Detail

Summary

• ID
  rs233957868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153266399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCTTCTA CCCAACACCC CCTTCCTTCT
  TCCTCACCTG CTTCCTATGC TGTGTCCCCG GACTGACAAG CACTGCAAGG GGGGAAGGAA
  TCACGATCCG GCAGCGCATC TCCTGGTCCA TGCACTGCTC TGCCCTTCCT TCAGAGCTTC
  Y
  GTGAACATCC TTTCCCCAGG GAAGGTTCCC ACCGTGCCTA TCCCATCTCA TCCTGGCACA
  AGCTCTGGCT GCTCTTCTGC ACGACTCCTC CCAAGGAAGT TGGCCCTATA GCCACACGAT
  TGTAGCCGTG GCACCCTTCT CCCACTGGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320564085	CHEV_2_153250215	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233957868					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153266399 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567635	regulatory region 567635			1002 bp distal
Rr567636	regulatory region 567636			105 bp proximal
Tssr699	transcription start site region 699			214 bp downstream