rs233901880 SNP Detail

Summary

• ID
  rs233901880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134345057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTACG ATTTTCCCTA
  ACAATATTTA CACCCTTCGT TTCCTTTCCT AATCCGATTG TGACTCAACT CTGTCGACTC
  TGTCCAGGGC TATTCATTAA GTTGTCAAAA GAACAACTTG CTCTTTGCCC CCGGATTTCA
  CTGCTCTTTG GAATATTTAA CCAGATTCCA TAAGACCGAA ACAGGAGTCC TACTCCTTTG
  S
  AGCAGGGGCT ACGTTCTAAG ATGCATGCCT GAAATTAAAT CACTCCAAAC TTTTTTCCCT
  ACATATGCTT AGGATGAAAG TTCTGCAAGG TCCTGGGATG CACACCTGAC ATTCCAACAC
  TTGGGAGGAT ATGAGCTGGA GAAGAGACTG TCCAAGTAGG GAATTCATGT CAGCCAGGGC
  TAGGAGATAA GACCATGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366807855	MGP_WTSI_5_134792073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233901880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366807855	MGP_WTSI_5_134792073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134345057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	1045 bp distal
Gm71534	predicted gene, 71534	539 bp downstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	within coordinates
Rr621989	regulatory region 621989	1938 bp distal
Rr621990	regulatory region 621990	1391 bp distal
Rr621991	regulatory region 621991	within coordinates
Rr621992	regulatory region 621992	459 bp distal
Tssr1657	transcription start site region 1657	1245 bp upstream
Tssr49089	transcription start site region 49089	1211 bp downstream
Tssr53631	transcription start site region 53631	1779 bp upstream
Tssr53632	transcription start site region 53632	1751 bp upstream
Tssr53633	transcription start site region 53633	1730 bp upstream
Tssr53634	transcription start site region 53634	1704 bp upstream
Tssr53635	transcription start site region 53635	1655 bp upstream
Tssr53636	transcription start site region 53636	1632 bp upstream
Tssr53637	transcription start site region 53637	1527 bp upstream
Tssr53638	transcription start site region 53638	1482 bp upstream