rs233874041 SNP Detail

Summary

• ID
  rs233874041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96011283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA TGTGTTTTTA CAACATTAAC
  Y
  AAAAAACTGA CTGTGGCAGG GATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320841457	CHEV_3_95907894	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233874041					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96011283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13535	CpG island 13535	207 bp proximal
Gm30044	predicted gene, 30044	within coordinates
Otud7b	OTU domain containing 7B	556 bp upstream
Rr581149	regulatory region 581149	1116 bp distal
Rr581150	regulatory region 581150	within coordinates
Rr581151	regulatory region 581151	411 bp proximal
Rr581152	regulatory region 581152	567 bp proximal
Tssr30678	transcription start site region 30678	507 bp upstream
Tssr30679	transcription start site region 30679	527 bp upstream
Tssr30680	transcription start site region 30680	845 bp upstream