rs233872327 SNP Detail

Summary

• ID
  rs233872327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19528290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTCATA GTTGCTTGTA
  CCACAAAGAT AATTACCTCC ATCTTTAGTG GGTAACGCTG TAAGATTAAT ATAAAGACTG
  AGTATTTTTA GTAGAAGTTG TAGATTTGTT CTTATTTCCA CCAAATTCAA GATACTACAA
  ATCATTTGAA AGGGAAGCTT TAAAAATGAT GCAGCTCACA AACCTAGAGT TGGTTAGATG
  Y
  AGAAATGAGA TGCTGTGGAA TGGTAAACAC TAGAAAATGC ATGATTGGCA GCAGAGATCC
  ATGGGCACAG CCAAGGGGTC TAGTCAATGG TCAGTAGTGT ACTTGGAAGG AGATGGACAC
  TAAAGCAGGC AGCCCACGTT GTGATATCTC ATATGGGCAC TTTGAGATTC AGCTAAGTAG
  AGGGTGGGCT ACTTGAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387895160	MGP_WTSI_13_19435989	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233872327					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387895160	MGP_WTSI_13_19435989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19528290 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	438 bp upstream
Trgj4	T cell receptor gamma joining 4	1908 bp downstream
Tssr118547	transcription start site region 118547	1978 bp downstream
Tssr118548	transcription start site region 118548	1959 bp downstream
Tssr118549	transcription start site region 118549	1381 bp downstream
Tssr118550	transcription start site region 118550	661 bp downstream
Tssr118551	transcription start site region 118551	80 bp upstream
Tssr118552	transcription start site region 118552	1836 bp upstream
Tssr121589	transcription start site region 121589	854 bp upstream
Tssr121590	transcription start site region 121590	204 bp downstream
Tssr121591	transcription start site region 121591	1069 bp downstream
Tssr121592	transcription start site region 121592	1649 bp downstream