rs233845778 SNP Detail

Summary

• ID
  rs233845778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCACAGAG TTACCTCAAC
  TCTTTTTGGC TCACCTTCGA GGTTGTGGTC CACAGACAAA CATTTCGTAC TCTTCACTGT
  TCTCCAAGCC CTCTGAGTAG GTTTCTTCCT GATTATGAGT CATGCTGTGC TTGCTCTTTG
  TCACAATCTC ACTTCGTCCC CTTCAAAGTG GAAAAACCTC TACACACTCA CAAGGCCATG
  Y
  TCTACTCCCT CACCTCGTCC TTGCTTTTGT TTTTTCTGTC TTGTCCCCAC AGTGGTAAGC
  ATATCCCTGT GTCGGGTGTT CCTTCCGTCA TGTGCTGTTG CTTGCTCTTG GTGACTTCCA
  CTCTTTGCCT ACTGGGCTTT TCTGGGATAG GTGTCTACTT GGTATCATTG TTGCCTCAGC
  ATGGCCTATC CAGTGCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320947061	CHEV_3_126363375	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233845778					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1922 bp upstream
Gm43006	predicted gene 43006			1134 bp downstream
Rr397996	regulatory region 397996			1457 bp upstream
Rr584670	regulatory region 584670			1310 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1405 bp proximal