rs233807473 SNP Detail

Summary

• ID
  rs233807473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109334713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGCAGA GGCAGGCAGA
  TTTCTGAGTT CGAGGCTAGC CTGGTCTACA GAGTGAGTTC CAGGACAGCC AGGGATACAC
  ATAGAAACCC TGTCTCGAAA AACAAAACAA AACGAAACGG GAAAAAAAAA AAAAACGGAA
  AGAAGAAATC TCTAATCTCA TTCAAAATAC TGCCCCTCTT TTATAAATTC TAAATCCCAA
  R
  ATGGCCAAAG TGCTTCTAGT CCTCTCAAAG ACTGTTCTCG CTGGCTGAGA TTTCCACAGA
  CAGACAGTAT TCCTGACCTC TTACCTCTCG CTGGGCTAAT CATTATCCTC ACCAGTCCTT
  CGTGGACTCC ATTTCATTTC CCTTGAAAAT CTTTTTCTGC TTCTCCAGTC TGGGTTAGTC
  ACCTACTCAG AGTTCCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362802686	MGP_WTSI_4_109150121	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233807473					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362802686	MGP_WTSI_4_109150121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109334713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	498 bp distal
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	105 bp distal
Rr597333	regulatory region 597333	666 bp distal
Tssr38352	transcription start site region 38352	1666 bp downstream
Tssr38353	transcription start site region 38353	1615 bp downstream
Tssr42763	transcription start site region 42763	1227 bp upstream
Tssr42764	transcription start site region 42764	1079 bp upstream
Tssr42765	transcription start site region 42765	1039 bp upstream
Tssr42766	transcription start site region 42766	1020 bp upstream
Tssr42767	transcription start site region 42767	908 bp upstream
Tssr42768	transcription start site region 42768	851 bp upstream
Tssr42769	transcription start site region 42769	789 bp upstream