rs233800045 SNP Detail

Summary

• ID
  rs233800045
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129187734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTGCTAC TCCGGGAGCC
  AGCCCTGCAG GAGGTGCAGC AAGTCCACCA GGACATCCTG GCTGCCTACA AGCTCCACGC
  ACAGGCAGAG CTGGAGAGGG ACGGGCTCAG GGAGGAGATC CGGACGGTGA AGCAGAAGCT
  GTTCAAGGTG ACCAAGGAAT GCGTGGCTTA CCAATACCAG CTGGAGTGCC GTCAGCAGGA
  C
  GTGGCTCAGT TTGCCGACTG CAGGGAAGCG CTGACCACTC GGGCAGCCCA GCTCTCGGAA
  GAACTGACCC AGCTCCGAGA TGCCTGTCAG AAGCAGAAGG AGCAGTTACA GCAACAACTA
  GAAGCACCCC CGACCCAGAG CGATGGGCAC TTTCTCCAGG AGAGCCGACG GCTGTCGACA
  CAGTTTGAAA ATCTCATGGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311695	CHEV_4_128971185	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233800045					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129187734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	within coordinates
Rr600195	regulatory region 600195	1283 bp proximal
Rr600196	regulatory region 600196	1964 bp proximal
Sync	syncoilin	Coding-Synonymous