rs233792639 SNP Detail

Summary

• ID
  rs233792639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAAGTCT CTAAGGACCC
  TGCCTGCTTG GAGCCCACCC GTTGCTGGCC GTGCAGAATG ACAAGCTAGC TCCAGGAGAC
  ACTTGCCAGC CTTTCGCCTT TCCTACATGG CTCCCTGCAC CCTCCTAAGG TTTAGCATGT
  TCTGGTTTTG TTTTTCATTT TTTTATTGCT GGGGATAGAC CTCAGGGCCT AGGCATGCTC
  R
  GGCAAACATT CCACCACTGA ACTACAGCCT CAGCTCTTGT TTTTTAAGCT GAGTTCTCTA
  TGTAACTCAG GCTAATCTCA GCCTGTGGCT CTCCTGTGTT GTATTAAGTA TTTAATCTCA
  ATTGGGGGTT TCTACCCCAC TTTTGATCAT TCAGTTCCCA GATAAAAGAC AGAAAACTTT
  CATATTTATA ATAAGCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353521	CHEV_4_135494037	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233792639					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			993 bp proximal
Rr602206	regulatory region 602206			1027 bp proximal