rs233778040 SNP Detail

Summary

• ID
  rs233778040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACAAATG TGTAGGCGTG
  GAACGGTAGG CGTATGAGCA AGAGCTGAAG CCCCGGGGGT GAATGGAAGA ACCAGAGGAA
  AGAAAGACCA GGAGCTGAGG AGAATGAGCC GGTTCAAGAG CAATGACAGA GTGAAGGGAG
  GATTCACCCT TAAAAGACCG GTTCGGGAAG GGCGTGGCAC AGGAGAGACC TCAGGAAACC
  R
  CAGTCTAGAG AGTAAATCGG GGAAAGGGAA GGGGCCCAGA GTAAGGAAGA AACGTGTTTC
  TGGAAAAGCA GAGCCCTCAG AATGTCTAAT ACTCACTTAC AAATGTATTT ACCGACATGT
  AAAATATTTA CCATAACTAC GAAGCTGCTG TTCTCTCTGC TAGCCTTCCA GGAGACACCC
  TTAAACAGAA GCAACGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355574590	MGP_WTSI_2_126323979	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233778040					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355574590	MGP_WTSI_2_126323979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340163 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1719 bp distal
Rr564346	regulatory region 564346	628 bp proximal
Rr564347	regulatory region 564347	1200 bp proximal
Rr564348	regulatory region 564348	1594 bp proximal
Tssr632	transcription start site region 632	1772 bp upstream
Tssr19934	transcription start site region 19934	822 bp upstream
Tssr19935	transcription start site region 19935	1732 bp upstream
Tssr26038	transcription start site region 26038	69 bp upstream
Tssr26039	transcription start site region 26039	1438 bp downstream
Tssr26040	transcription start site region 26040	1471 bp downstream
Tssr26041	transcription start site region 26041	1488 bp downstream
Tssr26042	transcription start site region 26042	1533 bp downstream
Tssr26043	transcription start site region 26043	1596 bp downstream
Tssr26044	transcription start site region 26044	1671 bp downstream