rs233696885 SNP Detail

Summary

• ID
  rs233696885
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119071118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGGAT GTAGCCTGCC
  CATCTGCTTT CCCCCCTTCC TATTGCTGGC AGCTTTTACA TAATAAAAAC AGGTTCAGCT
  CAGCCAGGGC TTACACTCAG TGTCTGGTAA ATGCGGCCCA GCCCTTGGCA GCCCTGTTTC
  CAGGTAACCA CAATCTGTTC CTCTTGACTT CTTCCCTTTT TTTTTTTTTT TTTTTTGTGT
  K
  TGTGTGTGTG TGTGTCTTTC AGGTTCCCTG CTTTCTCTTT GACCCCTTTT TTTCTTTCTT
  TCTTGATTTT AGTCTGAGTC TAACCTCAAA CCTCACCTGC CAAGCAAGGC TCCCACCAGC
  AAGCCACATC CCTGGCCCTT TTTGCAAAAC TTTGAGATGG GGTCCCACTA GGCCGACATG
  GAACTAGTTC TGTAGCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355426238	MGP_WTSI_2_119066373	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs233696885					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355426238	MGP_WTSI_2_119066373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119071118 () rs orientation: forward

Symbol	Name	Function Class
Rr563451	regulatory region 563451	1 bp distal
Rr563452	regulatory region 563452	1958 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19620	transcription start site region 19620	within coordinates