rs233669036 SNP Detail

Summary

• ID
  rs233669036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98284400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGGCCTGC TACCCACCCA GCCAGCCAGG
  CGCGGACTTC CAGGCCCGGC TGGCCGGCCT GCGAGCGCAG CGATCGCGCG TGCTCGCGGA
  TCTAGCGGCC CGCGGCCTCC CGCAGCGGGG CGGAGCCTCC CCGCGGTCGG TGGGAGGGAG
  R
  GGAGGGAGCA GAGGAACCGA CCTGGCCTCG AGTGGGCCTC GCGTCCCTCC GGCCTCTCTC
  TGCTGAGCTG GGGAGGTGGC TCTTAAGTCT TTGGGAAAGT TAATGGATTC CTGCTGGGAA
  TCAAGTTCTG GAACGCACAT CTTTCCCACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321220826	CHEV_4_98062854	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233669036					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98284400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14470	CpG island 14470			within coordinates
Patj	PATJ, crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr376896	regulatory region 376896			within coordinates
Rr595734	regulatory region 595734			261 bp distal
Rr595735	regulatory region 595735			within coordinates
Tssr37875	transcription start site region 37875			367 bp downstream
Tssr37876	transcription start site region 37876			275 bp downstream
Tssr37877	transcription start site region 37877			255 bp downstream
Tssr37878	transcription start site region 37878			215 bp upstream