rs233663883 SNP Detail

Summary

• ID
  rs233663883
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110252955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGC TTGCCAGGCT GACCCCCCCC
  H
  CCACTTGCTC CCATTCCCTA TACAA                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss920026344	MGP_WTSI_9_110423887	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	C	A	T	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs233663883					SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	C	A	T	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920026344	MGP_WTSI_9_110423887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110252955 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	875 bp downstream
Tssr3023	transcription start site region 3023	1505 bp upstream
Tssr3024	transcription start site region 3024	1487 bp upstream
Tssr3025	transcription start site region 3025	1398 bp upstream
Tssr3026	transcription start site region 3026	1349 bp upstream
Tssr3027	transcription start site region 3027	1252 bp upstream
Tssr3028	transcription start site region 3028	1186 bp upstream
Tssr3029	transcription start site region 3029	1170 bp upstream
Tssr3030	transcription start site region 3030	1159 bp upstream
Tssr3031	transcription start site region 3031	967 bp upstream
Tssr87368	transcription start site region 87368	1609 bp downstream
Tssr87369	transcription start site region 87369	1591 bp downstream
Tssr87370	transcription start site region 87370	1541 bp downstream
Tssr87371	transcription start site region 87371	1513 bp downstream
Tssr87372	transcription start site region 87372	1443 bp downstream
Tssr87373	transcription start site region 87373	1403 bp downstream
Tssr87374	transcription start site region 87374	1381 bp downstream
Tssr87375	transcription start site region 87375	1358 bp downstream
Tssr87376	transcription start site region 87376	1352 bp downstream
Tssr87377	transcription start site region 87377	1338 bp downstream
Tssr87378	transcription start site region 87378	1287 bp downstream
Tssr87379	transcription start site region 87379	1242 bp downstream
Tssr87380	transcription start site region 87380	1025 bp downstream
Tssr91619	transcription start site region 91619	1557 bp upstream
Tssr91620	transcription start site region 91620	1453 bp upstream
Tssr91621	transcription start site region 91621	1374 bp upstream
Tssr91622	transcription start site region 91622	1312 bp upstream
Tssr91623	transcription start site region 91623	877 bp upstream