rs233654262 SNP Detail

Summary

• ID
  rs233654262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:55365015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAAGTA ATAGAGTTCC
  ATTAAGATAG GAGGGGGAGC CATGTCTGTC TTTTCAAGTC ATAAGTCTCT CTACTTTCTG
  GTCAGATGAA GGAGTAGATT AGACTCATTT TCTAATTCTT TATCAGGAGC CTGTTATCAC
  ATTGTTTTAG GAATTGAAAT GCCATAAAGG TCATCCATTC CAGCCCTCCA TTATAGATGA
  R
  GCTGATGGTG AGAGAGGCTG AGCCACTTGC TGAGAATCAT TTCAGTGACC TAGTAGCTCT
  CAGCCTGTGC TGAACTTGGA ACTAGCTTGT GAGATGGGCT TAAAAACACT GCTGCTTAAA
  TGGCATTATG TCATTGGTCT TCTGATTGGT TATAATAAAG CATTATAATA AAATTGCCTT
  TAGCATTGAT GTATTTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
ss361594788	MGP_WTSI_4_55377887	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
rs233654262					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361594788	MGP_WTSI_4_55377887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55365015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rad23b	RAD23 homolog B, nucleotide excision repair protein			Intron
				Noncoding-Transcript-Variant
Rr592471	regulatory region 592471			330 bp distal
Rr592472	regulatory region 592472			414 bp distal
Tssr37329	transcription start site region 37329			1795 bp upstream