rs233630275 SNP Detail

Summary

• ID
  rs233630275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106454953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCAGCTA GTCCGTCCGC AGCTACCCAG TTCTGTCTAG
  CCCAGAGCCT CCGGCCCTCG CTCCGCTCCT CCCGGGACAA AACCGCCCCG CCACGTCCGC
  R
  ACATCCCCGC CCCTTCCCTA GGCCGGGCCC CCGCAGCCTT ACCCCGAACC CAACAAGCAC
  AAGCCTAGAA ATAGCAACTC CGACTCCAGG CGACTGAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863781	CHEV_3_106350555	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233630275					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106454953 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			within coordinates
Dram2	DNA-damage regulated autophagy modulator 2			161 bp upstream
Rr375539	regulatory region 375539			within coordinates
Rr582854	regulatory region 582854			1666 bp distal
Rr582855	regulatory region 582855			66 bp distal
Rr582856	regulatory region 582856			within coordinates
Rr582857	regulatory region 582857			246 bp proximal
Rr582858	regulatory region 582858			1417 bp proximal
Tssr31114	transcription start site region 31114			1738 bp downstream
Tssr31115	transcription start site region 31115			60 bp upstream
Tssr31116	transcription start site region 31116			90 bp upstream
Tssr31117	transcription start site region 31117			185 bp upstream
Tssr34980	transcription start site region 34980			1465 bp upstream
Tssr34981	transcription start site region 34981			59 bp upstream
Tssr34982	transcription start site region 34982			44 bp upstream
Tssr34983	transcription start site region 34983			65 bp downstream
Tssr34984	transcription start site region 34984			89 bp downstream