rs233604306 SNP Detail

Summary

• ID
  rs233604306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53155092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGTTGG GACACGCATT
  CTTAGAAGGC ATGCTGTTTT GAGAGGTTAA GTGACCTTCT GGCTAGCTAG CATGGGGTAG
  GTTGCTGAAG GCAACCTTTG AAGGTACAGC CCTATACACT AGTTCTAGTT TGACTCTCTT
  GCCTTCCTGT TCTGTCCCCC TTGAGCGCCT TTGCCTTAGG CTCACTATGA CAAAGAACTG
  Y
  TCAGCCACAC CTTCTCCATC CAATGGACTA AAAGCCCCAG AAACCGGGAG CCCAAAGGAA
  TCCACCCTTC CTTAGATTGC CTCTTCAGAA GGTTTGTCCT AGGCAAGAAG TAGTAGCTGA
  TACAGCACGT AGTCACGGTT GCATATACTG TGTAGGTGAA TAGTCAAGTT TAAGTGTTTC
  TCTGCAATTA GCAGAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320767205	CHEV_3_53051593	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233604306					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53155092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576667	regulatory region 576667			1883 bp distal
Rr576668	regulatory region 576668			281 bp distal
Rr576669	regulatory region 576669			362 bp distal