rs233552935 SNP Detail

Summary

• ID
  rs233552935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72593833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGGGCT GGGGTGGGGG
  TCCTTACTCG CCACCGCGAC ACTCAGCAGG AGCAACGCAA CCTGGAACCG CATCCTGCAG
  TCTGCGCTTC CGCCCTCTGA TGACGTGAGA GCGGCGCACG AGATTTTCCC GAGCGTGGCC
  CCTCCCTTTC CGGCGGACTG TTTCTCTTCC GGCGCAGCCC CGCCTTAGGG GTGGGGCTAC
  Y
  GGGCGACAGC AGCCGTTGTC TGTGTGTTCC GGTAGAGTGC CGGAAGTCAA GTCCAGCTCT
  TTATTCCCCC CCAAGTCCCT TCTGTTTCTC AGCAGTCTGC GGGGCTCGGC GATCTCGTTC
  TTGTTCACTT GGCCTCGTTT TTCGGAAGCT GTTGCGACCG GCAGGTGCTG CGTCGCCTTC
  GCTGCTTATG ATGTAGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368753306	MGP_WTSI_6_72566844	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233552935					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368753306	MGP_WTSI_6_72566844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72593833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	within coordinates
Gm20536	predicted gene 20536	660 bp downstream
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	within coordinates
Rr632243	regulatory region 632243	1354 bp distal
Rr632244	regulatory region 632244	23 bp distal
Rr632245	regulatory region 632245	93 bp distal
Rr632246	regulatory region 632246	within coordinates
Rr632247	regulatory region 632247	140 bp proximal
Tgoln1	trans-golgi network protein	mRNA-UTR
Tssr57152	transcription start site region 57152	5 bp upstream
Tssr61478	transcription start site region 61478	94 bp upstream