rs233500235 SNP Detail

Summary

• ID
  rs233500235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37842906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGCATG TAGCTATTTT
  CATAGACTAA GTGGCAAGCT CTCAGAATAA TCATGTCTGT GAGGTGTTTC TGGGACATTT
  CCACTTCCAG CTTCACGTTA ATTGCAGAGG CTGAGGATGC TGTGAATGTC GAACTCCTCG
  GCCGGGCTCC GGAGATGTGG AGCATACGGT GTGGTGGGTG CAGGAAGGGT TTCTCCGGCC
  Y
  TTTCCTCCCA GCGTTTAATT TCCTCTTCTA CCACCTGAGA GGCATTACAA CACACTGGAT
  CTCCCGTATC CAGCACAGTT TTAAAATACA CATGGAGGTC TGGGGTTAGT TCAGTTGTTG
  AAGTGTTTTC AGTGTAAGTC TGAGGACCGG ATGATCTCGA ACCCACTTTA AAAAAGCCAC
  ACGTGGTGGT CCTTCCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320712818	CHEV_3_37687679	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233500235					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37842906 () rs orientation: forward

Symbol	Name	Function Class
Rr575564	regulatory region 575564	1636 bp distal
Rr575565	regulatory region 575565	16 bp distal
Rr575566	regulatory region 575566	565 bp proximal