rs233499813 SNP Detail

Summary

• ID
  rs233499813
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163382268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTAGAAC ATAGGCATTT
  TCTCAACTTA CAGGGAAGAA ACTGAAGCTG AAGGGTCCAG ACAGTCTGGG AAGGGCTCTG
  GCTTCTGTGT GTCTCTAAGG GCTGGATGCT TCCAGAGGTA GGACATAGCC AAGATTAGGA
  GGTGCCCCTG CCTCACATTC CTGCTGCTGG GACTACTCAG AGACCTACAG GACACAGATG
  S
  CATCCCCTAA CTTGGGCCTC TGGTGGCTCT CAGAGATCTC AGAGAAAAAG ACCTGTCATC
  TCTGTCCCAG GAGAGCCAGA CTATCTATCT AGTATAGCCT GTTCTTGGAC AGGCCGCATC
  CCCACTTCCG CCTCCATCTC CCATCTGCTG GGTCTGGGCC AGCACTTTCC CAGCTTGAAA
  ATGAACTATT AAGATCTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603604	CHEV_2_163366084	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233499813					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163382268 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	400 bp distal
Rr569405	regulatory region 569405	within coordinates
Rr569406	regulatory region 569406	444 bp proximal
Rr569407	regulatory region 569407	1312 bp proximal
Tssr27298	transcription start site region 27298	1367 bp downstream