rs233495262 SNP Detail

Summary

• ID
  rs233495262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69759729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCACCC TATGTGATGG
  CTCACAACTG TCTGTAACAA TAGTTCTTGG GAATCCAATA TTCTCTTGTG GCTACGACAG
  GCACATACAA ATGTGCAGAC AAACGCTCTC ACACATAAAA TAATTTTTAA AAGTTCCCAA
  TATTTTTCTG GGAGTGGTGG TGTATACCTC TAGGCAGTTG GTGGAGGGGG AGGGAAGGGG
  R
  AGGGGGGAAG GGAAGGAGAT GAAGGAGGTG GAGGGGGAGG CGGAGGGGGA GGGGGAGGAG
  GTGGAAGAGG TGGCTACAGT GAGTTTGTGA GTTTGAGGTG AGCTGTAGTA CACAAGGCCT
  TTAACACACA CACACACACA CACACACACA CACACACACA CCTTATACAT ATATCTATAT
  ATACACACAT ATACATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss354381297	MGP_WTSI_2_69767442	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs233495262					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354381297	MGP_WTSI_2_69767442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69759729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558496	regulatory region 558496			542 bp proximal
Tssr18186	transcription start site region 18186			1143 bp upstream
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant