rs233424418 SNP Detail

Summary

• ID
  rs233424418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95902637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCAGGG GACCTACATA
  TGCCCTCCTC CCTCCCAACC CCCGCAGGAA CGGAGAGAGT GGTGGGCTGG GGTGGGGAAG
  ACAGGAAGGA TCGAGGGATA CGAATACCAG TGTGTAACAA AAACAAACCC CACCAAAACC
  CCCAACCGTA TTTTAGGGGG CCAGAATAGA GGGAGAGGCG GCGGATGTCA GAACTTCTGA
  R
  AAAGGTGTCC GCAAAGGCAC ATCAAATAAG TAAACTCCTA AACCCCACTC AGGTTCTCTC
  ACTCGGGGGT GACTTTTTTC TGCAGACACA GGACTTTTGC GACCCCTGAA CTTGCAGAGA
  TGGAGGCGGG GCAAGCCGGA GAACTAGCCG CCGTGGGGAC AGGGTCCCGA CGGCTCGCGC
  AAGGGCGGGC GCCTACCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358911528	MGP_WTSI_3_95799248	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233424418					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358911528	MGP_WTSI_3_95799248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95902637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13533	CpG island 13533	within coordinates
Gm9052	predicted gene 9052	666 bp upstream
Gm65578	predicted gene, 65578	1778 bp downstream
Plekho1	pleckstrin homology domain containing, family O member 1	Intron
Rr581114	regulatory region 581114	825 bp distal
Rr581115	regulatory region 581115	1318 bp distal
Rr581116	regulatory region 581116	176 bp proximal
Rr581117	regulatory region 581117	1995 bp proximal
Tssr30672	transcription start site region 30672	1283 bp downstream
Tssr30673	transcription start site region 30673	1203 bp downstream
Tssr30674	transcription start site region 30674	660 bp upstream
Tssr30675	transcription start site region 30675	781 bp upstream
Tssr30676	transcription start site region 30676	820 bp upstream
Tssr34576	transcription start site region 34576	1647 bp upstream
Tssr34577	transcription start site region 34577	1606 bp upstream
Tssr34578	transcription start site region 34578	315 bp downstream
Tssr34579	transcription start site region 34579	337 bp downstream
Tssr34580	transcription start site region 34580	373 bp downstream
Tssr34581	transcription start site region 34581	466 bp downstream
Tssr34582	transcription start site region 34582	485 bp downstream
Tssr34583	transcription start site region 34583	510 bp downstream
Tssr34584	transcription start site region 34584	611 bp downstream
Tssr34585	transcription start site region 34585	674 bp downstream
Tssr34586	transcription start site region 34586	1987 bp downstream