rs233424189 SNP Detail

Summary

• ID
  rs233424189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5496886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCCAA GAATCTCACC
  GCGGAGCGTG CATTGGTGTT CGCTCAGAGC GGGACTTTTA CAGTAGCCAA TCATCTGCTT
  ACTAAAGTAT GGGCTTCTTT GCCATTGGAC CTCGAAAGCA AGGACCACCC TACAGTTTTA
  TCCACTTTCT TCTTAGCGAA CAGCTCAAGT TTAGAAACTG CCTAAATAGG CTTATTATTA
  M
  TGTGGTGGAA AATCCCAGTT CACTTCTCTC CTGTAACACT TTCTACCTGT TAATTAAATG
  CAAACTAAAG AGCGATTTGC TGAGGGTTTG GCTGGCCCTG TAGTCCCCCT TCCCTGTCAT
  TCCCCTCTTT CTCTAAGGCC TTCTAGTTTG CTCTTGACCG CCCTCCACTC CCCAGTCTGC
  TCCAAAAGCT CTTTCTTCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729289	CHEV_6_5446886	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233424189					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5496886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	246 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	608 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	87 bp distal
Rr626153	regulatory region 626153	1830 bp proximal
Tssr59753	transcription start site region 59753	1034 bp upstream
Tssr59754	transcription start site region 59754	1005 bp upstream
Tssr59755	transcription start site region 59755	954 bp upstream
Tssr59756	transcription start site region 59756	596 bp upstream
Tssr59757	transcription start site region 59757	570 bp upstream