rs233401873 SNP Detail

Summary

• ID
  rs233401873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGACTAAT TCATATATAT GCATTGTTTC
  TCAAGGGCAC TGGTCAGGTT CAACCTTCTT TCTAGAAAGT TCTCATTATT CTCCTCCGTG
  GATGGAGATA TTACTTTTCT CACTAGCCCT GAAGAATCAT CCACGCCTCA TAACTTTGAG
  W
  TTTAATCTAA CATCACAAAC TAATATTGGC ACATCCCAAA GTCCCAGGTC TAAATTAGAC
  TCAAGTATAT TATGCTTTGC CATTCGTAGC TCAGTGATTT CATGCAAGTG ACTTAAAATC
  TGAATCTTTT TGATTCCAGA ATTTATAGAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320438724	CHEV_2_102389002	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233401873					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	921 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	1167 bp upstream
Rr561703	regulatory region 561703	786 bp proximal
Tssr19094	transcription start site region 19094	1200 bp upstream
Tssr19095	transcription start site region 19095	1254 bp upstream
Tssr19096	transcription start site region 19096	1272 bp upstream
Tssr19097	transcription start site region 19097	1293 bp upstream