rs233296325 SNP Detail

Summary

• ID
  rs233296325
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155379921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCTCTC GGCCACTGAG
  CCATCTCTCC AGCCCAATCT TAAACTTCTG GCTGCCCTGC CTCTGTTTCC GTGAGTGCTG
  GGATCACAGG CACTGTGGCG CCTCCTGGGG GTGGAATTCT GGGACTTGAC TCTGCGAGAG
  CAACCACTCT GCATATTGAG AGATATCTCC AGGGATAGAC TGAGCTCTAT CAGCAGCCTC
  K
  CGAATCTTTT GGGGGAAAGG TCTTGATATA TAGCCCAGGC TTGTCTTAGC CTCAGTGCTG
  TGCTTACAGG TCTGTCAGGA GAGTCACTCT TACCAGGGGC CAGGAAAGAG GAACTGCTGA
  CCAAAGATAG CATGGACTTA CCAATATGGA CTGGACTGAG ACCTCATGCG TATGTTTCTT
  AGGGGAGCTA CCAAAACTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441564	CHEV_4_154669573	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233296325					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155379921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			213 bp proximal
Rr606444	regulatory region 606444			788 bp proximal
Rr606445	regulatory region 606445			1529 bp proximal
Rr606446	regulatory region 606446			1826 bp proximal