rs233257662 SNP Detail

Summary

• ID
  rs233257662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58204666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGATGG GAGAGGGGTC
  TGAAGGGGAG ACCTGGAAAG GGGAAAACAT TCGAAATGTA AATAAAGAAA ATATCCAATA
  AAAAATATCA TGTATTCAGA TGCACATAAC AGGAGAATGT AAATTTATAC AACTCTCCAA
  TGGAGGAGGT GGCAATGTGG ACCAAGACCT TTCAAATGTT CATGTATTTT ACTAAATAAG
  R
  AATTTAGAAA GCCCTCCTAA AGAAGCAGTC AAAGAGGGCT TCCTAAACTC CTTATTTAAA
  AGGCACGAAT GTGTGCTCCC CACACAGCAG TTCTCAGCAC TCAGTTGTCA TGAGGCTGGA
  GATAGGGCTC AGTGGTTAAG AGCACTGACT TTCTCAGGTA TGGCTTGCCT GAAGTCCACT
  GCCAGCCCAC CCCCACCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321137331	CHEV_4_58217538	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233257662					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58204666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			1032 bp proximal
Rr592872	regulatory region 592872			1920 bp proximal
Rr592873	regulatory region 592873			1976 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1657 bp downstream
Tssr41871	transcription start site region 41871			1682 bp downstream
Tssr41872	transcription start site region 41872			1838 bp downstream
Tssr41873	transcription start site region 41873			1867 bp downstream
Tssr41874	transcription start site region 41874			1892 bp downstream
Tssr41875	transcription start site region 41875			1912 bp downstream
Tssr41876	transcription start site region 41876			1933 bp downstream
Tssr41877	transcription start site region 41877			1973 bp downstream