rs233246490 SNP Detail

Summary

• ID
  rs233246490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATATAAT TTTAATTCTG
  ATTTATATGA ATGAAAGGAG ATATTCAGTA TTTATCTTTC TGAGGGCAAG GCAATCGGTA
  AGGGAGTCAG ACCAAGCTGC CAACCTGGGC AGTGGGTGTT GGCCCATCTC ATCATGTGAG
  TGCTCCCAAA GCATTAAGTC AAAGTTGACG AGGACTCTGG GATCCAGGCC AGTGCTATGA
  K
  CTAGTGCTCT TTTTAGTCAT AACAGAACCT TTTATATCAT CTTTTTAAAA AATGTACAAA
  AAAGTACCAC AAAATGACAT GTCCCGACAG TGCAGGAAGA CATATATCGA CTTTTGATAC
  ATTTAATGTT TCTAAACACA AAGTCCAGTT GCACAGCCAA AAGGTGGTTA TCTTTCAGCT
  CTGAGTGGCT GATGTGTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357060595	MGP_WTSI_3_14873013	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233246490					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357060595	MGP_WTSI_3_14873013	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938073 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	632 bp downstream
Rr397608	regulatory region 397608	1389 bp upstream
Rr573713	regulatory region 573713	1244 bp distal
Rr573714	regulatory region 573714	1456 bp proximal
Rr573715	regulatory region 573715	1552 bp proximal
Tssr28448	transcription start site region 28448	1467 bp downstream
Tssr28449	transcription start site region 28449	1403 bp downstream
Tssr28450	transcription start site region 28450	1360 bp downstream
Tssr28451	transcription start site region 28451	1343 bp downstream
Tssr28452	transcription start site region 28452	1321 bp downstream
Tssr28453	transcription start site region 28453	1308 bp downstream
Tssr28454	transcription start site region 28454	1296 bp downstream
Tssr28455	transcription start site region 28455	1278 bp downstream
Tssr28456	transcription start site region 28456	1241 bp downstream
Tssr28457	transcription start site region 28457	1179 bp downstream
Tssr28458	transcription start site region 28458	982 bp downstream
Tssr28459	transcription start site region 28459	945 bp downstream
Tssr28460	transcription start site region 28460	859 bp downstream
Tssr28461	transcription start site region 28461	803 bp downstream
Tssr28462	transcription start site region 28462	766 bp downstream
Tssr28463	transcription start site region 28463	715 bp downstream
Tssr28464	transcription start site region 28464	674 bp downstream
Tssr28465	transcription start site region 28465	535 bp downstream
Tssr32653	transcription start site region 32653	1209 bp upstream
Tssr32654	transcription start site region 32654	476 bp upstream