rs233226844 SNP Detail

Summary

• ID
  rs233226844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121163395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGACCCA GTGATGTCAT
  CTATGATGTC ACTACCGCCT CATCGGCACT GCCTGTTTTT GGTCTGAATG AGATGTGCCT
  TATAAGTCCC AAGCCTGTGA CTACTGGGCT CACAGTTGGT GGCTGTTGGA GGAGAATTAG
  AAGGTATGGC CTTGCTGGAG GAAGTATGTC ACGGATGTGT GTGTGTGTGG GGGGGGGGGG
  R
  GGTTACAAGT GACCCATGCC ATTTTCAGCT GCTCTGTTTC CTGCCCGTGT TTCCTGCTCG
  TGCTCTGAGA TGTGAGCACT CTGCTGTTAC TCCAGCTGCC TTGGTCTGCT TCCTGCACGG
  CTTCCCTGCT GTGATGGTGA CAGGCACTTA GCCCTCTAGG GACCATACAC CCAAAAATGA
  GCCCTTTCTT CTTGCTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	PWK/PhJ	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss359472354	MGP_WTSI_3_121072664	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	PWK/PhJ	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs233226844					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359472354	MGP_WTSI_3_121072664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121163395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	715 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	within coordinates
Rr397974	regulatory region 397974	443 bp upstream
Rr584057	regulatory region 584057	127 bp distal
Rr584058	regulatory region 584058	within coordinates
Rr584059	regulatory region 584059	462 bp proximal
Rr584060	regulatory region 584060	1568 bp proximal
Tssr31438	transcription start site region 31438	148 bp downstream
Tssr31439	transcription start site region 31439	87 bp downstream