rs233217659 SNP Detail

Summary

• ID
  rs233217659
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68523467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTCCT GGAGGGGAAG
  GAAACTTTCT TCATAGTCTT GGGACACTGG TTCTTGTGAA CTTGTTTGGG TTGTCCTTCT
  AAAGCAGAAT TCGAAATAGC ATTCCACCAC ATTATTGGCT CAAGTCTGTT CATCTCGAGT
  GGCAGAACTG CAAACACAAA ACATCTTTCT GTATGGGCCA GCTCTGTGTT TGTTATCCAC
  B
  GGGTGCTATA ACGTAGAGCG TTAAGCGACA AACTGATGTG GAAAAAAGAC CGGAATTCTG
  GGAGGCCCTC TGATAAACTT TTTAATTGCA GGAAAGAATT GGCTGAGGCA GAAGGATTGC
  CATCCCAGGC TACGTAGCAA AATCCTGTCT CAACCACAAC AGAAGGAAAT GTAGAATGAT
  TTGGGTCACT AAGTTCTCCA                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358304923	MGP_WTSI_3_68420056	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	G	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233217659					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	G	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358304923	MGP_WTSI_3_68420056	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68523467 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578048	regulatory region 578048	1617 bp distal
Rr578049	regulatory region 578049	592 bp distal
Rr578050	regulatory region 578050	839 bp distal
Rr578051	regulatory region 578051	626 bp distal
Schip1	schwannomin interacting protein 1	Intron
Tssr29474	transcription start site region 29474	1887 bp upstream
Tssr29475	transcription start site region 29475	1971 bp upstream