rs233193563 SNP Detail

Summary

• ID
  rs233193563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90422458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGGTG CTTATAAACT
  TCAGCCTCAG GGCTCCAGAT CGGTTAGCTG CATCCCACCT TCTTTCCCGG TGAGTTACTT
  TTCCTGACTG CAGAGAACCT GGAGACCTTC CTTTCTTTAT CAGCTCCCGG GTCCCTCCTT
  CCAAGCGGGT TCAGGCAGAG ATTCAGGAAG TGACTTTAGG AGAGCAGGCA ACGGTCCCCG
  R
  AGGAGTATGT GGGTGGGTGG ACAGACAGAA ATGAGGGGAC GAGTGGGCAT GTTTCTTCCC
  TTCCTGGACC CCCGAAGGCC CTGGTGTCCA GGCCAAACAC TTTGTGGGTT GTGGATGTGA
  GGAGTTTGAA GAGTCCCTTT CTAGATCTTG TCAGTCATGG ACAGTAGCAG GGAAGGTCGG
  TGGGTTCTTG TGCTGAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358833724	MGP_WTSI_3_90319073	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233193563					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358833724	MGP_WTSI_3_90319073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90422458 () rs orientation: forward

Symbol	Name	Function Class
Rr375350	regulatory region 375350	1082 bp downstream
Rr580384	regulatory region 580384	884 bp distal
Rr580385	regulatory region 580385	1169 bp distal
Rr580386	regulatory region 580386	1052 bp distal
Rr580387	regulatory region 580387	773 bp distal
Rr580388	regulatory region 580388	752 bp distal
Rr580389	regulatory region 580389	706 bp distal
Rr580390	regulatory region 580390	within coordinates
S100a1	S100 calcium binding protein A1	821 bp upstream
S100a13	S100 calcium binding protein A13	Intron
Tssr30209	transcription start site region 30209	175 bp downstream
Tssr30210	transcription start site region 30210	153 bp downstream
Tssr34242	transcription start site region 34242	817 bp upstream
Tssr34243	transcription start site region 34243	785 bp upstream
Tssr34244	transcription start site region 34244	772 bp upstream
Tssr34245	transcription start site region 34245	731 bp upstream