rs233129957 SNP Detail

Summary

• ID
  rs233129957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTGCAGC TAGAGACAGC TCCCTTGTCA
  GCTGGTTCAG AGCTCTCTCT GAGGCTAAGG CTGGAGAAAA CCTAGCAGAG ACAGTAGCTT
  ACAGCCACTG TGCCAAGCGG CTCTGCGGAA GGCCATGGCT TTAGCTGCAG TGCCTGGGAG
  R
  GGATCTGGAC CTGTCTCACA ACCAAGCCAA GTGTCTTTGA TAGTCCTTTT TGGCCAGGGC
  ATTATTCAGT CACTGGCGGA AGTTATTTAG GGTCACCCGC TGTGAAGGGC TGGGGAAAGG
  ACGTGGGCTG TGGTCAGATC CCAAAGGAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367272	CHEV_4_137324513	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233129957					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495909 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602709	regulatory region 602709			1939 bp distal
Rr602710	regulatory region 602710			230 bp proximal
Rr602711	regulatory region 602711			1035 bp proximal
Tssr44137	transcription start site region 44137			1065 bp downstream
Tssr44138	transcription start site region 44138			1096 bp downstream
Tssr44139	transcription start site region 44139			1350 bp downstream
Tssr44140	transcription start site region 44140			1364 bp downstream
Tssr44141	transcription start site region 44141			1381 bp downstream
Tssr44142	transcription start site region 44142			1390 bp downstream
Tssr44143	transcription start site region 44143			1406 bp downstream
Tssr44144	transcription start site region 44144			1432 bp downstream
Tssr44145	transcription start site region 44145			1457 bp downstream