rs233121011 SNP Detail

Summary

• ID
  rs233121011
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108991895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCAAGG CATATGCAGG
  ATCTTAATTT TTTATCTATC AGTTAAGAAA TAAATTTAAC TTAGATAAAC TTTTAAAAAG
  GAAGGAAGAA GGAAGGAAGG GAGGGAGGGT GGGGGGGAAG GAAGGGAGGG AGGGAGGGAG
  GGAGGGAGGG AGGGAGGGAG GGAGGGAGGG AGGGAGGGAG AAAGCTAGCA AGCCAGGTGG
  W
  GGTGGCACAC GCCTTTAATC CCAGCACTCA GGAGGCAAAG GCAGGTGGAT CTCGGAGTTT
  GAGGCCAGCC TGACCTACAG AATGGGTTTC AGAACAGCCA GAGCTGTGTG GAGAAACCCT
  GTCTCAGACA CCAAAAAACA CAAACAAAAC AAAAAACAAC AAAAAAGAAA AGACAGACAG
  AAGACAGTTA CCATAAACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362796288	MGP_WTSI_4_108807303	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	T	A	T	A	A	A	A	A	A	A	T	T	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	T	A	A	T	A	T	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233121011					SNP	A	A	A	A	A	T	T	A	T	A	A	A	A	A	A	A	T	T	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	T	A	A	T	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362796288	MGP_WTSI_4_108807303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108991895 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52703	predicted gene, 52703			within coordinates
Osbpl9	oxysterol binding protein-like 9			Intron
				Noncoding-Transcript-Variant
Rr597274	regulatory region 597274			1825 bp proximal
Tssr42749	transcription start site region 42749			1619 bp upstream