rs233096787 SNP Detail

Summary

• ID
  rs233096787
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109248891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCTCAC TTGCCTTGAA
  ATGACTTAGC TTCTAAGCAG AACTAATAAA GCCTTGCGTC GGGAGATGGT GTATGGAATC
  CTAAAGGTTT CTGGGAGGCG GGAAGAAATA AGTTATCCTA GGGCGCGTTT CACCTTTCTG
  CCCCCCCCCC CCGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGATAACAA AGAGGGAGTC
  A
  GCTCTAAAAT AACAATGAGA AGGGATGAGA TGAAGCGGTG GGGTTAATTT TGCTTTGACT
  TATTTTTTGC TTTCATTTGG TCCTCACGTT CTGGAAAGAG GAACTGTGCC ATAGATGAGG
  ACTCTAGGAA GTGGAGGGCG TTTGGTACCG TTATCTGCTC AGAGGAAATA AACCAAGAGG
  GACACAGAGA GCCTTCCTGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868533	CHEV_3_109144493	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233096787					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109248891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13716	CpG island 13716			221 bp distal
Rr367533	regulatory region 367533			200 bp upstream
Rr583407	regulatory region 583407			912 bp distal
Tssr31282	transcription start site region 31282			1207 bp downstream
Tssr31283	transcription start site region 31283			1102 bp downstream
Tssr31284	transcription start site region 31284			929 bp downstream
Tssr31285	transcription start site region 31285			905 bp downstream
Tssr31286	transcription start site region 31286			883 bp downstream
Tssr31287	transcription start site region 31287			860 bp downstream
Tssr31288	transcription start site region 31288			832 bp downstream
Tssr31289	transcription start site region 31289			788 bp downstream
Tssr31290	transcription start site region 31290			755 bp downstream
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant