rs233035742 SNP Detail

Summary

• ID
  rs233035742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8929222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGCAGA CCAGCAGCAG
  TGATGGTGAA TGCGGGAGCC CGACAGTGGT CAAACCTGAA GGGAAGCTCT GGTTGAGGGC
  AGCCTTCCCT GATGGCCATC TCCAGACCCA GGCCATAACA CTGTCTAACC TCTCCACCCT
  AGTCTTCCGA GGGAGGAAGA CTCGAGGCCA CTCGGTAACC TGAGCGCTTC CAACCTCACG
  Y
  GAGAAGAGCT CTACGGGAAG ATAACAATAG CTAAATTGCA ATTCGGGAGG AATGCAGAAA
  ATTGAATAGT TGGACTGACT GTCTTCTCTT TCCGACATCA GAGTGAGTAC CCCAGTACAC
  AAACGATTGC TTGCTTCTTA GTCCATGATC TCTAGCAACA GACCCCTGCT TCTAGCTTCC
  TAGTACCACC GACGCAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320648897	CHEV_3_8864162	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233035742					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8929222 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	893 bp proximal
Rr407269	regulatory region 407269	1935 bp proximal
Rr573330	regulatory region 573330	356 bp distal
Rr573331	regulatory region 573331	166 bp proximal
Rr573332	regulatory region 573332	1311 bp proximal
Tssr32560	transcription start site region 32560	860 bp upstream