rs233009423 SNP Detail

Summary

• ID
  rs233009423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113053227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAGAGAA CTCCCAGAAA GGTATTGCAA
  CACTCCCCTC CCCCCTCCGG AGAAGGGTGC GGCCTTCTCC CCGCCTACTC CACTGCAGCT
  CCCTTACTGA TAACAACTCA GAGCGACTTT GGGAGAGCAA GTGCTTCCTG CCTCCAAAAC
  R
  GCCCAACTGA GCCCTCGCTC CTTCCCTCCA CTCCCCGGAG TGCGCGATGG AGGTCTGGCT
  CAGCACGCCC CTCTTGAGGC AACTCAAGTC GGAAACGTGC TTGCACCCGC CCCGCAGCCG
  CTCAGCCCTA CTGCCCGTCC CCGCCCCCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321909781	CHEV_6_113026260	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233009423					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113053227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636448	regulatory region 636448	1624 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	122 bp proximal
Rr636451	regulatory region 636451	1036 bp proximal
Rr636452	regulatory region 636452	1048 bp proximal
Rr636453	regulatory region 636453	1384 bp proximal
Setd5	SET domain containing 5	1099 bp upstream
Tssr58166	transcription start site region 58166	1088 bp upstream
Tssr58167	transcription start site region 58167	1121 bp upstream
Tssr58168	transcription start site region 58168	1189 bp upstream
Tssr58169	transcription start site region 58169	1301 bp upstream
Tssr58170	transcription start site region 58170	1365 bp upstream
Tssr62428	transcription start site region 62428	51 bp downstream
Tssr62429	transcription start site region 62429	915 bp downstream
Tssr62430	transcription start site region 62430	971 bp downstream