rs233001620 SNP Detail

Summary

• ID
  rs233001620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15640075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGGAGC TTCAATGTAG
  CACATGAATA TTACATTTAA AAAAAAAGAG AGAGAACTCG ATTTAAACTG TTTCAAACAG
  GGAGGGGATT GGAGGGAGCT GAGAGAAGAG GACATGCCAG GCAATGTGCT CTGGCTCCCT
  GGAGTGTACC TGCACCAATG GCCACCATGC CAAGTTGGTA AGCACAAATC CAGGCCTACA
  R
  TGACTCACCA CCCTACCAGC TCTGAACATG CTCAGATTTG ATTTTGGTTT GGGTCATATC
  AGAAGAATAG ATAGAATACA GTATGAATTT TGTGAGGTGA CTCTTTCCTG AAAAAAAAAA
  AAAGTTTCTC ACTTACCAAT TTAAATGCTT ATTCTTAGCA CAGTGCATAA TAGCATTTAC
  CCAGGTTCAG TGCTCTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321752017	CHEV_6_15590076	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233001620					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15640075 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	319 bp upstream
Gm44039	predicted gene, 44039	1707 bp downstream
Rr626670	regulatory region 626670	855 bp distal
Rr626671	regulatory region 626671	within coordinates