rs232958227 SNP Detail

Summary

• ID
  rs232958227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107137789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGCCT TTGAAAGGCA
  TCCAGAAAGC TTTTCTTCCC AGATGTTTGG TTTTCCCAAC TAAGGAGAGG CGTCCAAGCT
  CTGAAGTTTG GTAAGGGGTG TGGCACAAAA GCCCCCAGAG GCTGGGCCAA GGAGCTGAAA
  GCTGACTCTT TGTGATGCCT TCATAAGGAT GAAAGATGAG TAGCTGACCA CCCCCGTGAC
  R
  CTTCCACAGG GCAGATGATA TCCTGAGCAC TTCCCATTCG CTAACACTTA ATCTTCACTG
  CCACCCCAAG AAGCAGATGA TGATGATGGT GATGATGCTG GTGCCATTAA TAAAGGGGGA
  ACTTGAAACA CAGAAAGTTC AGTAAACCGA CCAAAGTCCC AAGCTAGGAA GCAGCTGGTG
  CTGGCTGTGA TGCTAAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864777	CHEV_3_107033391	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232958227					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107137789 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	141 bp upstream
D3Tem2	DNA segment, Chr 3, Temple 2	971 bp proximal
Rr582941	regulatory region 582941	960 bp distal
Rr582942	regulatory region 582942	within coordinates
Rr582943	regulatory region 582943	152 bp proximal
Tssr31190	transcription start site region 31190	6 bp downstream
Tssr31191	transcription start site region 31191	135 bp upstream