rs232905139 SNP Detail

Summary

• ID
  rs232905139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164250660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTGAGAG GGGCGAGGTG
  GAAGGGTGCA ATTCGAACCC AGAGCTGCAA AAATGGGCGG AGGGTGCAAG TGTGGAGGAG
  GGGGTGAGAG GTGGAGTCTG GGTAGAAAGA AGGGAGGAGT CTGGGTGGAG TGGCTGGCCT
  AGACTAAGAG AAAAGGCACA CAGAGATTTC AGACAGGACA CAGGTAAGAG ATAGATATCA
  S
  ATTTGAAGAT GACAGTGGGG GACTCAGAAC AGACAAAAGC TGCAGCCAGG TGCCAAATCC
  GGGGCAAATT AAAAATGACC TTAAGGAAGT TGCATCAGCC AAAGATGGTG GTTCCCATGT
  GTAATTCCAG TGCTTAGATA AAAGAACTCT GAACTCTTAT CTAGGTCAGC CTAGGAGGGA
  GTGAGTGGGG AAAGGAAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605794	CHEV_2_164234240	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232905139					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164250660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			419 bp distal
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569601	regulatory region 569601			1043 bp distal
Rr569602	regulatory region 569602			821 bp distal