rs232825605 SNP Detail

Summary

• ID
  rs232825605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119456668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGACAAA GGCAGCAGGA
  AGCCGTCCGC AGCCCGAGCG CCCGGCCCGG GCCTCGCCGG CGCGCGCAGC AGCGACGCGG
  CCGGGCGCGG GATGCCGCAG GGCGCGGGGC GGCGCGCGGG CGCGGACGCG GCGCCCGCCC
  CGGCCGGGAT GTGAGGCCCG AGCGGCCGCG CGGGGGCGGG AAGGGCGGCA GGAAGGAAGC
  R
  CCGCTCGGAC GCGCCGGGAG GAGGAGCGGC GGCCCGGCCG GAAGGCGGGG AGGGGCGGCC
  GTTGGCCCGC GGCGGGCCGC TCTCGGCGCC TCCCGGGGCG GCGGCGGCGC CCGCGCCTCC
  TGCACCCGGC GCGGCGTAGC GGCGGGAGGA AGATGGAGAC CCACATCTCG TGCCTGTTCC
  CCGAGCTGCT GGCCATGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss369847828	MGP_WTSI_6_119429725	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	A	A	A	G	G	G	G	A	G	G	G	G	G	A	A	G	G	A	G	A	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs232825605					SNP	G	A	G	G	A	A	A	G	G	G	G	A	G	G	G	G	G	A	A	G	G	A	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369847828	MGP_WTSI_6_119429725	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119456668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	within coordinates
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637690	regulatory region 637690	1469 bp distal
Rr637691	regulatory region 637691	29 bp distal
Rr637692	regulatory region 637692	686 bp proximal
Tssr58502	transcription start site region 58502	205 bp downstream
Tssr58503	transcription start site region 58503	177 bp downstream
Tssr58504	transcription start site region 58504	160 bp downstream
Tssr58505	transcription start site region 58505	38 bp upstream
Tssr58506	transcription start site region 58506	1675 bp upstream
Tssr58507	transcription start site region 58507	1753 bp upstream
Tssr58508	transcription start site region 58508	1813 bp upstream
Tssr58509	transcription start site region 58509	1838 bp upstream
Tssr62722	transcription start site region 62722	752 bp downstream
Tssr62723	transcription start site region 62723	1850 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron