rs232802991 SNP Detail

Summary

• ID
  rs232802991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75512698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGAAGT ACACTGTCGC
  TGTCTTCAGA TGTACCAAAA GAGGGCGTCA GATCTCATTA TGGGTGGCTG TGAGTCACTA
  TGTGGTTGCT GGGATTTGAA CTTAGGAACT TCAGAAGAGC AGTCAGTGCT CTTACTGAGC
  CATCTTGCCA GCCCAAGAGC ATGGCACACT TTATCTTTTG TAATTTTTTC TTCAGAGGTG
  R
  TGACCAAACC CAGGGCCTTG CACTTGCTTC CCCCACCTCT CCCCCGCCTT TTTTTTTTTT
  TTTTAAAGAT TTTTAAATTT ACTTTATGTA TATGAGTACA CCATTGTTCT CTTCAGACAC
  ACCAGAAGGT GGCATCAGAC CCCGTTACAG ATGGTTGTGA ACCACCTTGT GGTTGCTGGG
  AATTGAACAC AGGACCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320351242	CHEV_2_75520411	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232802991					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75512698 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	within coordinates
Rr559542	regulatory region 559542	495 bp distal
Rr559543	regulatory region 559543	149 bp distal
Rr559544	regulatory region 559544	118 bp proximal
Rr559545	regulatory region 559545	322 bp proximal
Rr559546	regulatory region 559546	408 bp proximal
Tssr18460	transcription start site region 18460	845 bp upstream