rs232786398 SNP Detail

Summary

• ID
  rs232786398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152050260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCCCTC TTATTTCATG
  GGCCAAAAAT AAAATGGAAA AAAAATTTCT CTTAAATTGC TCCTGGTGAT TCATGCCTTT
  AATCTCACAA GTCAGGAGGG AGAGCTCAAG GCTAGCCTGG GCTACATAAC AAGACCCTGA
  CTTAAAAACA AAACACAGTA GTTACAAAGC ACTGGCTGCT CTTCTAAAGG AATTGTGTTC
  R
  ATTCTTTGAC CCCATAGGTG ACTCACAACC ATCAATAACT CTAGTCTTGG GACCCAAGAC
  CTTCTTCTGG CTTCCTAGGG CACCGGTTAT TAAGATTATA CACAGACATA TATGTAGACA
  AAGCACCCAT ACAAATCAAT CAATCAGTCA ATCAATCAAT CCTCCAAAAA TAAACCCCAC
  CTTTACAGTA AAAGTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028701	CHEV_3_152007587	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232786398					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152050260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13948	CpG island 13948	1527 bp proximal
Rr587533	regulatory region 587533	879 bp distal
Rr587534	regulatory region 587534	1365 bp proximal
Rr587535	regulatory region 587535	1877 bp proximal
Tssr32406	transcription start site region 32406	1842 bp upstream
Usp33	ubiquitin specific peptidase 33	1855 bp upstream