rs232765370 SNP Detail

Summary

• ID
  rs232765370
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82936670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAAACT CACTATTTGA
  CTTTCAAAGG AACAACAAGG ATTCTAACTC ACTGACCAGG AATATCATGG AGTATTTGAG
  AGGGGACTTC GCGAATGCCA ACAGTAAGTG AGACATATTT AGTAGTTGGA CTTTCTAACA
  AGTATGGTAA CAAAAGTCCC AAATGATGTC TTCTTGGAGA TACTGTGGTT TTACTTCAAA
  K
  CACTCAGTGT GGAAATCACT GAAACTTAAG GAGATGGATG TCATTTTCAC AAAGTTAGAA
  GTTTTTAAAT AAAGAGAGGG GAACCTTTCA ACTAGCTGTT CAGCTTCTAT CCTACAGACA
  GAGTCTCAGA GGTCAAGGGA CTTCTCAGTG ACACAAAATA GAGGTCAGCT CAACATTGCA
  CTGAGTCGAT CATGTCTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676664	MGP_WTSI_3_82833285	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232765370					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676664	MGP_WTSI_3_82833285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82936670 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr29661	transcription start site region 29661	815 bp downstream
Tssr29662	transcription start site region 29662	766 bp downstream
Tssr29663	transcription start site region 29663	749 bp downstream
Tssr29664	transcription start site region 29664	266 bp downstream
Tssr29665	transcription start site region 29665	227 bp downstream
Tssr29666	transcription start site region 29666	191 bp downstream
Tssr29667	transcription start site region 29667	148 bp downstream
Tssr29668	transcription start site region 29668	835 bp upstream
Tssr29669	transcription start site region 29669	879 bp upstream
Tssr29670	transcription start site region 29670	923 bp upstream
Tssr29671	transcription start site region 29671	1467 bp upstream
Tssr29672	transcription start site region 29672	1570 bp upstream
Tssr29673	transcription start site region 29673	1598 bp upstream
Tssr29674	transcription start site region 29674	1647 bp upstream
Tssr29675	transcription start site region 29675	1657 bp upstream
Tssr29676	transcription start site region 29676	1667 bp upstream
Tssr29677	transcription start site region 29677	1684 bp upstream
Tssr29678	transcription start site region 29678	1763 bp upstream
Tssr29679	transcription start site region 29679	1807 bp upstream
Tssr29680	transcription start site region 29680	1830 bp upstream
Tssr29681	transcription start site region 29681	1932 bp upstream
Tssr29682	transcription start site region 29682	1955 bp upstream
Tssr29683	transcription start site region 29683	1998 bp upstream
Tssr33800	transcription start site region 33800	1739 bp downstream